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Exploring RNA Secondary Structure Prediction using the Nussinov Algorithm

References

  1. Nussinov, R., & Jacobson, A. B. (1980). Fast algorithm for predicting the secondary structure of single-stranded RNA. Proceedings of the National Academy of Sciences, 77(11), 6309-6313.

  2. Zhao, Q., Zhao, Z., Fan, X., Yuan, Z., Mao, Q., & Yao, Y. (2021). Review of machine learning methods for RNA secondary structure prediction. PLoS computational biology, 17(8), e1009291.

  3. Li, J., Ranka, S., & Sahni, S. (2014). Multicore and GPU algorithms for Nussinov RNA folding. BMC bioinformatics, 15, 1-9.

  4. Budnik, M., Wawrzyniak, J., Grala, Ł., Kadziński, M., & Szóstak, N. (2024). Deep dive into RNA: a systematic literature review on RNA structure prediction using machine learning methods. Artificial Intelligence Review, 57(9), 254.

  5. Chang, D. J., Kimmer, C., & Ouyang, M. (2010, December). Accelerating the Nussinov RNA folding algorithm with CUDA/GPU. In The 10th IEEE International Symposium on Signal Processing and Information Technology (pp. 120-125). IEEE.

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