UniProt Protein Sequence Retrieval in R
Procedure to work the simulator
Provide Uniprot accession in query box provided in the user interface. For example provide Uniprot accession Q9CD83.
Click on Run button to execute simulation.
- Protein sequence information such as name of protein, name of organism and the polypeptide chain related to the query sequence is displayed as result.
DIY
Follow ( https://vlab.amrita.edu/index.php?sub=3&brch=311&sim=1835&cnt=2) to install R in personal computer.
Install the SeqinR package.
To load “SeqinR” R package follow the commands
> library("seqinr")
> leprae <- read.fasta(file = "Q9CD83.fasta")
> ulcerans <- read.fasta(file = "A0PQ23.fasta")
> lepraeseq <- leprae[[1]]
> ulceransseq <- ulcerans[[1]]
> lepraeseq # Display the contents of the vector "lepraeseq"